Package: scPloidy 0.6.2

scPloidy: Infer Ploidy of Single Cells

Compute ploidy of single cells (or nuclei) based on single-cell (or single-nucleus) ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data <https://github.com/fumi-github/scPloidy>.

Authors:Fumihiko Takeuchi [aut, cre]

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scPloidy.pdf |scPloidy.html✨
scPloidy/json (API)

Peer review:

Bug tracker:https://github.com/fumi-github/scploidy/issues

On CRAN:

4 exports 3 stars 1.90 score 102 dependencies 8 scripts 944 downloads

Last updated 3 months agofrom:d521e8923f. Checks:OK: 7. Indexed: yes.

Exports:%>%cnvfragmentoverlapcountploidy

Dependencies:askpassbase64encBHBiocGenericsBiocParallelBiostringsbitopsbslibcachemclicodacodetoolscolorspacecpp11crayoncrosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphIRangesisobandjquerylibjsonlitekernlabknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixmatrixStatsmemoisemgcvmimemixtoolsmunsellnimblenlmenumDerivopensslpillarpkgconfigplotlypracmapromisespurrrR6rappdirsRColorBrewerRcppRhtslibrlangrmarkdownRsamtoolsS4VectorssassscalessegmentedsnowstringistringrsurvivalsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc