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Introduction to scPloidy2 years ago
Introduction | Usage | Analyzing sample data | Compute overlaps of DNA fragments | Infer ploidy | Analyzing your own data | Using fragments.tsv.gz generated by 10x Cell Ranger | Using BAM file
scPloidy 0.6.2Fumihiko Takeuchi intro.Rmd
Identify Copy Number Variations (CNVs) in cancer cells2 years ago
Download from GEO | Prepare windows and peaks | Compute fragmentoverlap from fragments | CNV
scPloidy 0.6.2Fumihiko Takeuchi CNV.Rmd
Introduction to omicwas6 years ago
Installation | Usage | Analyzing DNA methylation | Analyzing gene expression | Analyzing mQTL
omicwas 0.8.0Fumihiko Takeuchi intro.Rmd