Package: omicwas 0.8.0

omicwas: Cell-Type-Specific Association Testing in Bulk Omics Experiments

In bulk epigenome/transcriptome experiments, molecular expression is measured in a tissue, which is a mixture of multiple types of cells. This package tests association of a disease/phenotype with a molecular marker for each cell type. The proportion of cell types in each sample needs to be given as input. The package is applicable to epigenome-wide association study (EWAS) and differential gene expression analysis. Takeuchi and Kato (submitted) "omicwas: cell-type-specific epigenome-wide and transcriptome association study".

Authors:Fumihiko Takeuchi [aut, cre]

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omicwas.pdf |omicwas.html✨
omicwas/json (API)

Peer review:

Bug tracker:https://github.com/fumi-github/omicwas/issues

On CRAN:

3 exports 3 stars 1.18 score 38 dependencies 1 mentions 7 scripts 214 downloads

Last updated 3 years agofrom:1852179a55. Checks:OK: 7. Indexed: yes.

Exports:ctassocctcisQTLrrs.fit

Dependencies:backportsbitbroomclicodetoolscpp11data.tabledplyrfansiffforeachgenericsglmnetglueiteratorslatticelifecyclemagrittrMASSMatrixmatrixStatspillarpkgconfigpurrrR6RcppRcppEigenrlangshapestringistringrsurvivaltibbletidyrtidyselectutf8vctrswithr