Package: scPloidy
Type: Package
Title: Infer Ploidy of Single Cells
Version: 0.6.2
Authors@R: person("Fumihiko", "Takeuchi", role = c("aut", "cre"),
                  email = "fumihiko@takeuchi.name",
                  comment = c(ORCID = "0000-0003-3185-5661"))
Description: Compute ploidy of single cells (or nuclei) based on
        single-cell (or single-nucleus) ATAC-seq (Assay for
        Transposase-Accessible Chromatin using sequencing) data
        <https://github.com/fumi-github/scPloidy>.
BugReports: https://github.com/fumi-github/scPloidy/issues
Depends: R (>= 3.5.0)
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
Imports: dplyr, GenomicRanges, magrittr, MASS, matrixStats, mixtools,
        nimble, rlang, Rsamtools, tibble, tidyr, utils
Suggests: gplots, IRanges, knitr, readr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libbz2-dev libicu-dev
        liblzma-dev libuv1-dev libxml2-dev libssl-dev xz-utils
        zlib1g-dev
Repository: https://fumi-github.r-universe.dev
Date/Publication: 2024-07-03 23:28:48 UTC
RemoteUrl: https://github.com/fumi-github/scploidy
RemoteRef: HEAD
RemoteSha: d521e8923f0a59e0d8f84e86401540edea0f3655
NeedsCompilation: no
Packaged: 2026-10-06 10:52:01 UTC; root
Author: Fumihiko Takeuchi [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3185-5661>)
Maintainer: Fumihiko Takeuchi <fumihiko@takeuchi.name>