Package: omicwas
Type: Package
Title: Cell-Type-Specific Association Testing in Bulk Omics Experiments
Version: 0.8.0
Authors@R: person("Fumihiko", "Takeuchi", role = c("aut", "cre"),
                  email = "fumihiko@takeuchi.name",
                  comment = c(ORCID = "0000-0003-3185-5661"))
Description: In bulk epigenome/transcriptome experiments, molecular
        expression is measured in a tissue, which is a mixture of
        multiple types of cells. This package tests association of a
        disease/phenotype with a molecular marker for each cell type.
        The proportion of cell types in each sample needs to be given
        as input. The package is applicable to epigenome-wide
        association study (EWAS) and differential gene expression
        analysis. Takeuchi and Kato (submitted) "omicwas:
        cell-type-specific epigenome-wide and transcriptome association
        study".
URL: https://github.com/fumi-github/omicwas
BugReports: https://github.com/fumi-github/omicwas/issues
Depends: R (>= 3.6.0)
biocViews:
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: broom, data.table, dplyr, ff, glmnet, magrittr, MASS,
        matrixStats, parallel, purrr, rlang, tidyr
RoxygenNote: 7.1.1
Suggests: testthat, knitr, rmarkdown
VignetteBuilder: knitr
Config/pak/sysreqs: libicu-dev
Repository: https://fumi-github.r-universe.dev
Date/Publication: 2021-03-23 04:31:08 UTC
RemoteUrl: https://github.com/fumi-github/omicwas
RemoteRef: HEAD
RemoteSha: 1852179a55f06ed37748f57a8c3215144f194f68
NeedsCompilation: no
Packaged: 2026-10-06 10:06:07 UTC; root
Author: Fumihiko Takeuchi [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3185-5661>)
Maintainer: Fumihiko Takeuchi <fumihiko@takeuchi.name>